willtownes / nsf-paper

Related projects ⓘ

Alternatives and complementary repositories for nsf-paper

• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆21Updated last year
• zcang / SpaOTsc
  ☆44Updated last year
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆13Updated last month
• dpeerlab / ENVI
  ☆38Updated last month
• iancovert / persist
  ☆14Updated 3 months ago
• AllonKleinLab / cospar
  ☆26Updated 10 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated 2 weeks ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆44Updated 4 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆12Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆29Updated 10 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆35Updated last month
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆24Updated 2 months ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆54Updated last month
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆25Updated 3 years ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆12Updated 10 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated last week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆25Updated this week
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆20Updated 3 years ago
• prabhakarlab / Banksy_py
  ☆34Updated last week
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated last week
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆13Updated last week
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆38Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆50Updated 5 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated 2 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆41Updated 8 months ago