willtownes / nsf-paperLinks
Nonnegative spatial factorization for multivariate count data
☆59Updated 2 years ago
Alternatives and similar repositories for nsf-paper
Users that are interested in nsf-paper are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variation☆14Updated 9 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- ☆45Updated 2 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- CAST package☆40Updated 11 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 10 months ago
- ☆26Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 10 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- ☆19Updated 6 years ago
- ☆52Updated 4 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- ☆15Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆29Updated 2 months ago
- ☆51Updated 4 months ago
- ☆26Updated 5 years ago
- ☆62Updated 2 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month