willtownes / nsf-paperLinks
Nonnegative spatial factorization for multivariate count data
☆58Updated last year
Alternatives and similar repositories for nsf-paper
Users that are interested in nsf-paper are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variation☆14Updated 5 months ago
- CAST package☆38Updated 7 months ago
- ☆16Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆26Updated last year
- ☆45Updated 2 years ago
- ☆48Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 6 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆52Updated 4 years ago
- ☆21Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 5 months ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆10Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆21Updated 5 months ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- ☆20Updated last month
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆53Updated 4 months ago
- ☆24Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago