xzhoulab / iDEA
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
☆34Updated 2 years ago
Alternatives and similar repositories for iDEA:
Users that are interested in iDEA are comparing it to the libraries listed below
- ☆61Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- scWGCNA☆58Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆45Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆39Updated 4 years ago
- ☆37Updated 8 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆76Updated 7 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- Network construction Algorithm☆21Updated 6 months ago
- ☆37Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 3 weeks ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- CELLEX (CELL-type EXpression-specificity)☆39Updated last year
- ☆53Updated 4 years ago