Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
☆20Jan 26, 2026Updated 7 months ago
Alternatives and similar repositories for Vesalius
Users that are interested in Vesalius are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 4 years ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Aug 16, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 23, 2021Updated 4 years ago
- ☆10Nov 30, 2024Updated last year
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆69Mar 18, 2025Updated last year
- Genomic signature interpretation tool for DNA double-strand break repair mechanism☆11Oct 8, 2025Updated 10 months ago
- ☆10Mar 15, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- A study of performance of optimal transport.☆10Jul 4, 2020Updated 6 years ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Jul 13, 2018Updated 8 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Jun 16, 2026Updated 2 months ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 5 months ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 11 months ago
- ☆13Jul 15, 2022Updated 4 years ago
- A basic tutorial on HDC☆17Sep 30, 2022Updated 3 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- The ultimate search extension for R☆16Sep 27, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BLAKE3 Cryptographic Hash Function in R☆13Jan 13, 2020Updated 6 years ago
- Automatic Integration for Neural Spatio-Temporal Point Process models (AI-STPP) is a new paradigm for exact, efficient, non-parametric inf…☆25Oct 14, 2024Updated last year
- ☆16Feb 29, 2024Updated 2 years ago
- Monte Carlo Reference-based Consensus Clustering☆38Mar 14, 2020Updated 6 years ago
- An R Package for general purpose TIFF file I/O which plays nice with ImageJ☆16Jul 6, 2026Updated last month
- 3D segmention tool☆13Apr 6, 2023Updated 3 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago