WonLab-CS / VesaliusLinks
Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
☆20Updated last week
Alternatives and similar repositories for Vesalius
Users that are interested in Vesalius are comparing it to the libraries listed below
Sorting:
- An R package for performing cell typing in SMI and other single cell data☆38Updated 2 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated last week
- Methods for visualization and analysis of spatially-resolved gene expression☆20Updated 2 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 3 weeks ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated last month
- Spatial One☆28Updated 9 months ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated 3 weeks ago
- ☆38Updated last year
- ☆60Updated 2 years ago
- CAST package☆40Updated 9 months ago
- ☆55Updated last year
- ☆27Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆35Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- An R package for handling and analysing imaging mass cytometry data☆27Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- ☆40Updated last week
- Cytograph version used for adult human-brain analysis☆85Updated last month
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- From geospatial to spatial -omics☆95Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week