WonLab-CS / VesaliusLinks
Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
☆20Updated last month
Alternatives and similar repositories for Vesalius
Users that are interested in Vesalius are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆31Updated 4 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated last month
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 5 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Updated last month
- ☆51Updated last week
- Cell-type Relationship Analysis Workflow Done Across Distances☆37Updated this week
- ☆50Updated last month
- From geospatial to spatial -omics☆99Updated this week
- Spatial One☆29Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆47Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 3 weeks ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆22Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆32Updated last month
- ☆65Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 3 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 6 months ago
- ☆39Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 8 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 10 months ago
- ☆53Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- An R package for handling and analysing imaging mass cytometry data☆28Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆34Updated 2 months ago