Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
☆21Jan 26, 2026Updated 9 months ago
Alternatives and similar repositories for Vesalius
Users that are interested in Vesalius are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- Library and tools to deal with polyploid genomics☆11May 10, 2021Updated 5 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated last year
- ☆16May 25, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Aug 16, 2026Updated 2 months ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Milume: explore spatial biology in your notebook. Layer images, cells, and transcripts in 3D, in one reactive widget.☆32Updated this week
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆19Aug 25, 2026Updated 2 months ago
- Snakemake workflow to perform machine learning classification of microbiome sequence data☆10Nov 16, 2024Updated last year
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identification and Classification of the Most Influential Nodes☆30Oct 26, 2026Updated last week
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- ☆13Dec 23, 2021Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆25Jul 6, 2023Updated 3 years ago
- An R package designed to demultiplex cell hashing data☆32Oct 10, 2026Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆146Mar 13, 2026Updated 7 months ago
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- package for analysis of ligand and receptor connectivity between populations in scRNA-seq data☆13May 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An example of how to organize files for a research project to increase reproducibility☆12Nov 2, 2018Updated 8 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆71Mar 18, 2025Updated last year
- Malva algorithm for indexing and index querying☆26Oct 16, 2026Updated 2 weeks ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- Data science in R notes☆15Oct 3, 2026Updated 3 weeks ago
- ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments☆12Updated this week
- SS^3☆16Aug 19, 2021Updated 5 years ago
- ☆19Apr 5, 2024Updated 2 years ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Quarto template for thesis dissertations at Universitat Pompeu Fabra☆13Jan 4, 2024Updated 2 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated 2 years ago
- A study of performance of optimal transport.☆10Jul 4, 2020Updated 6 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Mar 7, 2014Updated 12 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Jul 13, 2018Updated 8 years ago
- Single-cell Case Control Analysis☆59Oct 13, 2026Updated 2 weeks ago