wzthu / NeuronMotifLinks
NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
☆11Updated 2 years ago
Alternatives and similar repositories for NeuronMotif
Users that are interested in NeuronMotif are comparing it to the libraries listed below
Sorting:
- ☆36Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆12Updated 2 years ago
- ☆26Updated 8 months ago
- ☆69Updated 3 weeks ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 8 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 4 months ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Updated 7 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 5 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ☆32Updated 3 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Toolkit for single-cell DNA methylation analysis.☆44Updated last week
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆18Updated 3 years ago
- A python package for chromVAR☆32Updated 2 years ago
- ☆52Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated last month
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 8 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago