MingyuYang-Yale / DBiT-seq
☆25Updated 2 months ago
Alternatives and similar repositories for DBiT-seq
Users that are interested in DBiT-seq are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆103Updated 2 weeks ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆81Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 2 weeks ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- ☆61Updated 4 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆11Updated 8 months ago
- ☆50Updated 7 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆108Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆60Updated 5 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆18Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Create cisTarget databases☆50Updated 3 months ago
- ☆28Updated 2 years ago
- ☆51Updated 8 months ago
- ☆30Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆44Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 3 weeks ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆63Updated 2 weeks ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆42Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆67Updated 2 years ago