MingyuYang-Yale / DBiT-seqLinks
☆25Updated 3 months ago
Alternatives and similar repositories for DBiT-seq
Users that are interested in DBiT-seq are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆70Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆74Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- ☆61Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆30Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 2 months ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆12Updated 9 months ago
- Accurate and fast cell marker gene identification with COSG☆44Updated 2 months ago
- Create cisTarget databases☆50Updated 3 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- deMULTIplex2: robust sample demultiplexing for scRNA-seq☆14Updated 3 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆56Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆112Updated 8 months ago
- Analysis for BICCN cross-species primary motor cortex project☆22Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆50Updated 8 months ago
- ☆45Updated 3 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆45Updated last year
- Methods for decontamination of single cell data☆45Updated 3 months ago