MingyuYang-Yale / DBiT-seqView external linksLinks
☆25Feb 25, 2025Updated 11 months ago
Alternatives and similar repositories for DBiT-seq
Users that are interested in DBiT-seq are comparing it to the libraries listed below
Sorting:
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Jan 22, 2026Updated 3 weeks ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- ☆11Jun 25, 2024Updated last year
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- An algorithm for mapping cell state transitions.☆29Mar 3, 2023Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Apr 13, 2021Updated 4 years ago
- Spatially resolved transcriptomic analysis☆63Nov 17, 2022Updated 3 years ago
- Develop custom oligo design pipelines.☆26Updated this week
- ☆34Apr 8, 2023Updated 2 years ago
- ☆18May 12, 2023Updated 2 years ago
- CAST package☆42Oct 26, 2024Updated last year
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated last month
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Jan 31, 2026Updated 2 weeks ago
- ☆23Mar 29, 2023Updated 2 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Nov 11, 2021Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆25Jun 24, 2025Updated 7 months ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- Project Manager for NGS data analysis☆31Jan 27, 2026Updated 2 weeks ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- ☆29Apr 26, 2024Updated last year
- ☆30Sep 22, 2023Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated this week
- overview of spatial datasets☆78Feb 19, 2024Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 8 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Dec 1, 2025Updated 2 months ago
- ☆36Mar 22, 2024Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Jun 7, 2022Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Nov 18, 2024Updated last year
- ☆11Feb 6, 2026Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37May 10, 2022Updated 3 years ago
- MemVerge Netflow Plugin☆16Jun 24, 2025Updated 7 months ago
- ☆10Sep 29, 2023Updated 2 years ago