BBQuercus / deepBlink
Threshold independent detection and localization of diffraction-limited spots.
☆34Updated 2 years ago
Alternatives and similar repositories for deepBlink:
Users that are interested in deepBlink are comparing it to the libraries listed below
- QuPath extension for Cellsparse☆18Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆23Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆66Updated 5 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated last month
- ☆17Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆68Updated 3 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated 3 years ago
- ☆20Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Accurate and efficient spot detection for microscopy data☆70Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ☆29Updated 11 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- ☆15Updated 7 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Piecewise alignment for layers of mosaics☆23Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 3 months ago