Alternatives and similar repositories for deepBlink

Users that are interested in deepBlink are comparing it to the libraries listed below

• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 6 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated last month
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last month
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 9 months ago
• funkelab / linajea
  ☆18Updated 2 years ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated 2 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 7 months ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆17Updated 2 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆49Updated 4 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 10 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 7 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last month
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆47Updated this week
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆17Updated last month
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last week
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆22Updated 2 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆73Updated this week
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆21Updated last week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated last year
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 6 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆85Updated last week