BBQuercus / deepBlinkLinks
Threshold independent detection and localization of diffraction-limited spots.
☆38Updated 3 years ago
Alternatives and similar repositories for deepBlink
Users that are interested in deepBlink are comparing it to the libraries listed below
Sorting:
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated 3 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆88Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Command-line client for Fractal☆47Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- ☆91Updated 2 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- A plugin to visualise 3D spatial single cell omics☆20Updated 2 months ago
- 3D segmentation for cells and organoids of 3D multichannel images☆26Updated 6 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- QuPath extension for Cellsparse☆19Updated 8 months ago
- ☆18Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Interactive visualization of spatial omics data☆73Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated this week
- StarDist plugin for napari☆38Updated last year
- Accurate and efficient spot detection for microscopy data☆113Updated this week
- ☆36Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 5 months ago