Threshold independent detection and localization of diffraction-limited spots.
☆39Oct 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for deepBlink
Users that are interested in deepBlink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA smFISH oligos/probes design tool☆14Oct 14, 2026Updated 2 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 3 years ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆41Apr 1, 2023Updated 3 years ago
- ☆31Apr 26, 2024Updated 2 years ago
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆49May 1, 2025Updated last year
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 2 months ago
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆12Mar 25, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Oct 23, 2026Updated last week
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆26Oct 21, 2026Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- Spatial Single-Cell Analysis Toolkit☆116Updated this week
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆14May 17, 2024Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆147Jun 8, 2026Updated 4 months ago
- ☆15Oct 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆38Sep 21, 2021Updated 5 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆74Oct 5, 2026Updated 3 weeks ago
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated 11 months ago
- Track cells and build cell lineages☆35Jun 4, 2026Updated 4 months ago
- ☆41Oct 14, 2026Updated 2 weeks ago
- CAST package☆44Oct 26, 2024Updated 2 years ago
- Speed up coding/extending image analysis in Python.☆37Oct 12, 2026Updated 2 weeks ago
- Stitching of large tiled datasets☆23Oct 22, 2026Updated last week
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆13Jul 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 4 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated 2 weeks ago
- Effortless, flexible, and powerful job execution engine.☆10Jul 24, 2025Updated last year
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week