PMBio / SpatialDELinks
Test genes for Spatial Variation
☆15Updated 10 months ago
Alternatives and similar repositories for SpatialDE
Users that are interested in SpatialDE are comparing it to the libraries listed below
Sorting:
- CAST package☆40Updated 11 months ago
- ☆29Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Nonnegative spatial factorization for multivariate count data☆60Updated 2 years ago
- ☆13Updated 6 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- ☆50Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆30Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Updated 4 months ago
- ☆38Updated 2 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆31Updated 3 months ago
- ☆22Updated 3 years ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Spatial One☆29Updated 11 months ago
- ☆45Updated 3 months ago
- ☆22Updated 5 years ago
- ☆26Updated 5 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆56Updated this week
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 8 months ago
- ☆39Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 10 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Differential spatial enrichment across conditions☆20Updated 3 weeks ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Identification of spatial homogeneous regions☆21Updated 2 weeks ago