PMBio / SpatialDELinks
Test genes for Spatial Variation
☆14Updated 5 months ago
Alternatives and similar repositories for SpatialDE
Users that are interested in SpatialDE are comparing it to the libraries listed below
Sorting:
- ☆27Updated 7 months ago
- CAST package☆40Updated 7 months ago
- ☆13Updated 6 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 5 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- ☆12Updated last year
- ☆21Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆19Updated 5 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated last week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆11Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- ☆26Updated last year
- ☆16Updated last month
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- ☆25Updated 5 years ago
- A python package for chromVAR☆28Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated last month
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Simple scVI implementation☆11Updated last week