Alternatives and similar repositories for pbampliconclustering

Users that are interested in pbampliconclustering are comparing it to the libraries listed below

• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 2 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated 3 weeks ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆55Updated last year
• yywan0913 / SVhawkeye
  ☆32Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 months ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• jason-weirather / AlignQC
  Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…
  ☆49Updated 7 years ago
• human-pangenomics / hprc_intermediate_assembly
  ☆40Updated this week
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆31Updated 2 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆22Updated 11 months ago
• mcfrith / dnarrange
  ☆16Updated 9 months ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆22Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆36Updated 5 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆38Updated 2 years ago