Alternatives and similar repositories for hpgp-data

Users that are interested in hpgp-data are comparing it to the libraries listed below

• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆59Updated 4 years ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆82Updated last week
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆76Updated 2 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 4 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆67Updated this week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆106Updated 3 weeks ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆115Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 3 months ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆76Updated 3 months ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆53Updated 5 years ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• GeneDx / scramble
  ☆39Updated last year
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆71Updated 4 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 2 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆54Updated 3 weeks ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 7 months ago
• MeHelmy / princess
  ☆80Updated 4 months ago
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆44Updated 7 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• shilpagarg / WHdenovo
  ☆47Updated 5 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated last month
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 6 years ago