Data from the Human PanGenomics Project
☆61Jul 15, 2021Updated 4 years ago
Alternatives and similar repositories for hpgp-data
Users that are interested in hpgp-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Jun 10, 2022Updated 3 years ago
- ☆61Jun 14, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- ☆84Mar 3, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆344Updated this week
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 11 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆247Dec 16, 2025Updated 3 months ago
- A Strategy for Building and Using a Human Reference Pangenome☆70May 29, 2020Updated 5 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆264Nov 30, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Long read aligner☆114May 26, 2023Updated 2 years ago
- VarIant SimulatOR for short, long and linked reads☆53Oct 21, 2024Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 7 months ago
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 8 months ago
- A complete diploid human genome☆145Mar 9, 2026Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Construct a Physical Map from Linked Reads☆18Mar 18, 2026Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆562Jul 13, 2024Updated last year
- Structural variant toolkit for VCFs☆401Updated this week