Data from the Human PanGenomics Project
☆61Jul 15, 2021Updated 4 years ago
Alternatives and similar repositories for hpgp-data
Users that are interested in hpgp-data are comparing it to the libraries listed below
Sorting:
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Jun 10, 2022Updated 3 years ago
- ☆61Jun 14, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- ☆84Mar 3, 2025Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- VarIant SimulatOR for short, long and linked reads☆53Oct 21, 2024Updated last year
- A complete diploid human genome☆144Feb 23, 2026Updated last week
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 5 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 10 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆337Feb 26, 2026Updated last week
- Structural Variant Index☆75Dec 13, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- GBWT-based handle graph☆31Feb 11, 2026Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆277Sep 30, 2025Updated 5 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last week
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- ☆10Jun 16, 2022Updated 3 years ago
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 6 months ago
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated last month
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- ☆21Nov 1, 2019Updated 6 years ago