human-pangenomics / hpgp-data
Data from the Human PanGenomics Project
☆60Updated 3 years ago
Alternatives and similar repositories for hpgp-data:
Users that are interested in hpgp-data are comparing it to the libraries listed below
- ☆57Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Toolkit for calling structural variants using short or long reads☆100Updated last week
- WDL’s and Dockerfiles for assembly QC process☆64Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- ☆39Updated 11 months ago
- Structural Variant Index☆72Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆77Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Phased assembly variant caller☆111Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆117Updated 2 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated 2 weeks ago
- SV caller for nanopore data☆91Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 6 months ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 11 months ago
- CNV screening and annotation tool☆24Updated 8 years ago
- Somatic structural variant caller for long-read data☆61Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆80Updated last month
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- ☆79Updated 3 weeks ago
- ☆56Updated this week