ay-lab / HiCnv
HiCnv is used to call copy number variations and breakpoints from Hi-C data
☆21Updated last year
Alternatives and similar repositories for HiCnv:
Users that are interested in HiCnv are comparing it to the libraries listed below
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- ☆37Updated 5 years ago
- ☆22Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- ☆20Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆22Updated 4 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆11Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- ☆21Updated 2 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Statistically Significant loops from HiChIP data☆42Updated last year
- ☆16Updated 4 years ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated 2 weeks ago
- chia pet analysis software☆25Updated 6 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- ☆23Updated 3 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- ☆11Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago