ay-lab / HiCnvLinks
HiCnv is used to call copy number variations and breakpoints from Hi-C data
☆21Updated last year
Alternatives and similar repositories for HiCnv
Users that are interested in HiCnv are comparing it to the libraries listed below
Sorting:
- ☆36Updated 5 years ago
- ☆23Updated 7 months ago
- ☆30Updated 7 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 10 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆22Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated 8 months ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- ☆15Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- ☆36Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- ☆19Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- ☆23Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ☆21Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆21Updated 5 months ago
- chia pet analysis software☆25Updated 6 years ago