schatzlab / appliedgenomics2021Links
Materials for Spring 2021 Applied Genomics Course
☆53Updated 4 years ago
Alternatives and similar repositories for appliedgenomics2021
Users that are interested in appliedgenomics2021 are comparing it to the libraries listed below
Sorting:
- perSVade: personalized Structural Variation detection☆40Updated last month
- Structural variant caller☆54Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- python plotly Circos from VCF☆38Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- Structural variant merging tool☆53Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- A battery of methylation tools for PacBio HiFi reads☆40Updated last month
- ☆31Updated last year
- ☆81Updated 5 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago