schatzlab / appliedgenomics2021Links
Materials for Spring 2021 Applied Genomics Course
☆53Updated 4 years ago
Alternatives and similar repositories for appliedgenomics2021
Users that are interested in appliedgenomics2021 are comparing it to the libraries listed below
Sorting:
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Structural variant caller☆54Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- ☆26Updated 5 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆40Updated 2 weeks ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- ☆29Updated 4 years ago
- ☆51Updated 5 years ago
- Structural variant merging tool☆53Updated 11 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated last month