Alternatives and similar repositories for appliedgenomics2021:

Users that are interested in appliedgenomics2021 are comparing it to the libraries listed below

• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated last month
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated 10 months ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆26Updated 9 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last month
• kjenike / panagram
  ☆61Updated last week
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆72Updated 7 months ago
• johnssproul / RepeatProfiler
  ☆24Updated this week
• MeHelmy / princess
  ☆79Updated 8 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆49Updated 2 years ago
• tseemann / samclip
  Filter SAM file for soft and hard clipped alignments
  ☆46Updated 7 months ago
• ISUgenomics / SequelTools
  new repo
  ☆27Updated 3 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated last year