☆35Jul 17, 2026Updated 3 months ago
Alternatives and similar repositories for seurat-object
Users that are interested in seurat-object are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 7 months ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Oct 5, 2026Updated 3 weeks ago
- Autonomous multi-agent framework to optimize scientific software☆55Sep 13, 2026Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 9 months ago
- HDF5 datasets as array-like objects in R☆13Aug 27, 2026Updated 2 months ago
- R toolkit for the analysis of single-cell chromatin data☆431Sep 11, 2026Updated last month
- ☆74May 28, 2025Updated last year
- A GPU-accelerated web application for visualization, annotation and sharing of spatial biology data☆14Updated this week
- A container (S4 class) for matrix-like assays☆39Oct 1, 2026Updated 3 weeks ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- A collection of Rfast2 functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. N…☆43Mar 5, 2026Updated 7 months ago
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Scaling Single Cell Analysis to Millions of Cells☆309Updated this week
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆248May 23, 2020Updated 6 years ago
- Gene set variation analysis☆248Oct 22, 2026Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆38Jul 1, 2024Updated 2 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Defines many S4 generic functions used in Bioconductor☆13Aug 10, 2026Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆314Jun 30, 2026Updated 3 months ago
- AnnData interoperability in R☆201Updated this week
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Cross-Entropy Clustering R Package☆10Aug 30, 2026Updated last month
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- Disease Ontology Semantic and Enrichment analysis☆125Oct 18, 2026Updated last week
- Tutorials for learning scverse☆23Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene set scoring for single-cell data☆214Sep 8, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆205Sep 10, 2026Updated last month
- ☆23Mar 2, 2026Updated 7 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- R package for analysing single cell data☆71Dec 8, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆238Updated this week
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year