☆33Apr 11, 2026Updated this week
Alternatives and similar repositories for seurat-object
Users that are interested in seurat-object are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆76Nov 11, 2025Updated 5 months ago
- Interfaces for HDF5-based Single Cell File Formats☆176Nov 4, 2023Updated 2 years ago
- ☆72May 28, 2025Updated 10 months ago
- A container (S4 class) for matrix-like assays☆38Feb 5, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆36Jul 1, 2024Updated last year
- Gene set variation analysis☆237Updated this week
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆240May 23, 2020Updated 5 years ago
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Apr 9, 2026Updated last week
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 10 months ago
- Dataset distribution for Seurat☆152Mar 6, 2025Updated last year
- Cell type pipes for R☆53Jan 27, 2024Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆412Updated this week
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 4 years ago
- ☆17Mar 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Coarse-graining of large single-cell RNA-seq data into metacells☆99Feb 23, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆633Apr 9, 2026Updated last week
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated 2 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆18Sep 19, 2025Updated 6 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆78Mar 1, 2026Updated last month
- BANKSY: spatial clustering☆140Oct 15, 2025Updated 6 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- From geospatial to spatial -omics☆102Mar 18, 2026Updated 3 weeks ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Oct 10, 2023Updated 2 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- Interactive Graphic for Exploring Liver Function Data in Clinical Trials☆11Mar 4, 2023Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆254Jan 10, 2026Updated 3 months ago