satijalab / seurat-objectLinks
☆29Updated 3 weeks ago
Alternatives and similar repositories for seurat-object
Users that are interested in seurat-object are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated 2 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Cell type pipes for R☆52Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- Various utility functions for Seurat single-cell analysis☆53Updated last week
- Extension of SpatialExperiment with sf☆55Updated last month
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 10 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated last month
- Collection of cell type reference datasets.☆60Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆27Updated 4 months ago
- R package for Bioconductor submission☆37Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- A repository of case studies using ProjecTILs☆15Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated last month
- R package to do the Ligand Receptor Analysis Visualization☆47Updated last month
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- ☆92Updated last week
- scRNAseq clustering tool☆11Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated last week