Alternatives and similar repositories for seurat-object

Users that are interested in seurat-object are comparing it to the libraries listed below

• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated last week
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated last week
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 3 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated this week
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆28Updated 4 months ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆25Updated last month
• bicciatolab / popsicleR
  popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…
  ☆24Updated last year
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated last year
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• carmonalab / ProjecTILs_CaseStudies
  A repository of case studies using ProjecTILs
  ☆14Updated 11 months ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 3 weeks ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆62Updated 8 months ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆48Updated last month
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆35Updated 2 years ago
• rbpatt2019 / chooseR
  An R framework for choosing clustering parameters in scRNA-seq analysis pipelines
  ☆34Updated 5 years ago
• ludvigla / semla
  ☆88Updated last week
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆51Updated 7 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 3 months ago
• drighelli / SpatialExperiment
  ☆66Updated last month
• kevyu27 / CellFindR
  scRNAseq clustering tool
  ☆11Updated 5 years ago