A manually curated database of literature-supported ligand-receptor interactions in human and mouse
☆33Jul 1, 2024Updated last year
Alternatives and similar repositories for CellTalkDB
Users that are interested in CellTalkDB are comparing it to the libraries listed below
Sorting:
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆14Jan 8, 2023Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year
- ☆33Feb 6, 2026Updated 3 weeks ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆97Nov 30, 2023Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Convert Seurat objects to 10x Genomics Loupe files.☆148Feb 4, 2026Updated 3 weeks ago
- Spatial Transcriptomics Capture Location Deconvolution☆201Oct 20, 2025Updated 4 months ago
- scDIOR: Single cell data IO softwaRe☆153Feb 15, 2022Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆94Updated this week
- Unbiased single-cell transcriptomic data cell type identification☆14May 7, 2024Updated last year
- ☆71May 28, 2025Updated 8 months ago
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆21Feb 2, 2026Updated 3 weeks ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆285Dec 16, 2025Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆70Nov 2, 2025Updated 3 months ago
- R package to do the Ligand Receptor Analysis Visualization☆49Feb 13, 2026Updated 2 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- Dataset distribution for Seurat☆151Mar 6, 2025Updated 11 months ago
- Easy single cell analysis platform for enrichment☆214Jan 4, 2026Updated last month
- R client for the OmniPath web service☆154Feb 12, 2026Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆543Feb 19, 2026Updated last week
- ☆10Dec 11, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 7 months ago
- The official implementation for "SANGO".☆11Mar 17, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 3 months ago
- ☆11Jan 12, 2024Updated 2 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- ☆26Dec 25, 2023Updated 2 years ago