powellgenomicslab / ascend
Analysis of Single Cell Expression, Normalization and Differential expression
☆12Updated 5 years ago
Alternatives and similar repositories for ascend:
Users that are interested in ascend are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆12Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆12Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆16Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- ☆22Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- ☆14Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆16Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- ☆10Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ☆21Updated 4 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago