powellgenomicslab / ascendLinks
Analysis of Single Cell Expression, Normalization and Differential expression
☆13Updated 5 years ago
Alternatives and similar repositories for ascend
Users that are interested in ascend are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆12Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- ☆12Updated 4 years ago
- ☆25Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 3 weeks ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- single nuclei RNA-seq analysis toolbox☆10Updated 9 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- ☆19Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Updated 4 years ago
- scover☆24Updated 2 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 5 years ago