satijalab / seurat-data
Dataset distribution for Seurat
☆134Updated last year
Alternatives and similar repositories for seurat-data:
Users that are interested in seurat-data are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the SingleR package.☆182Updated 3 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆237Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆263Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆262Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆221Updated last year
- ☆220Updated 7 months ago
- Easy single cell analysis platform for enrichment☆158Updated this week
- Community-provided extensions to Seurat☆319Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆177Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆177Updated 3 months ago
- A toolkit for single-cell immune profiling☆323Updated this week
- Interactively analyze single cell genomic data☆181Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆217Updated last month
- Fast Wilcoxon and auROC☆172Updated 2 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆219Updated 3 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆170Updated 2 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆281Updated 4 years ago
- ☆159Updated 5 months ago
- Cell types enrichment analysis☆191Updated 8 months ago
- Gene set scoring for single-cell data☆143Updated 2 months ago
- Some tools for plotting single-cell data☆166Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆172Updated this week
- A tool for detecting somatic variants in single cell data☆183Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆188Updated 5 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆157Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆222Updated 3 weeks ago
- my notes for scATACseq analysis☆119Updated 9 months ago
- Gene set variation analysis☆208Updated 2 weeks ago