Alternatives and similar repositories for seurat-data:

Users that are interested in seurat-data are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆188Updated 2 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆252Updated 2 weeks ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆330Updated 5 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆271Updated 3 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆174Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆192Updated 3 weeks ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆222Updated last week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆190Updated 2 weeks ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆180Updated 6 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆275Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆201Updated 9 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated this week
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆191Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• navinlabcode / copykat
  ☆231Updated 10 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆332Updated this week
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆169Updated last month
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆229Updated last year
• rcastelo / GSVA
  Gene set variation analysis
  ☆216Updated 2 weeks ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆248Updated last month
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆184Updated 2 weeks ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆371Updated 5 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆145Updated 3 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆205Updated this week
• dviraran / xCell
  Cell types enrichment analysis
  ☆195Updated 11 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆257Updated last year
• neurorestore / Libra
  ☆166Updated this week
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago