Alternatives and similar repositories for seurat-data

Users that are interested in seurat-data are comparing it to the libraries listed below

• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆261Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated 2 weeks ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆278Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆334Updated 7 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆158Updated 6 months ago
• navinlabcode / copykat
  ☆239Updated 11 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆198Updated 3 weeks ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last month
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆336Updated this week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆225Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆183Updated last week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated last month
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆196Updated 3 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆163Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆208Updated 10 months ago
• sunduanchen / Scissor
  Scissor package
  ☆222Updated last year
• neurorestore / Libra
  ☆172Updated last month
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆416Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆153Updated last month
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆298Updated 4 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆217Updated this week
• IanevskiAleksandr / sc-type
  ☆268Updated 7 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆206Updated 9 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆231Updated last year
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆381Updated 2 weeks ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆182Updated 7 months ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆171Updated last month
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago