satijalab / seurat-data
Dataset distribution for Seurat
☆134Updated last year
Alternatives and similar repositories for seurat-data:
Users that are interested in seurat-data are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the SingleR package.☆182Updated last month
- Interactively analyze single cell genomic data☆181Updated this week
- Interpretation of cell states using reference single-cell maps☆263Updated 2 months ago
- Easy single cell analysis platform for enrichment☆159Updated 2 weeks ago
- Community-provided extensions to Seurat☆320Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆222Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆180Updated this week
- ☆221Updated 7 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆220Updated last month
- A toolkit for single-cell immune profiling☆325Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆192Updated 6 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆176Updated this week
- Fast Wilcoxon and auROC☆173Updated 3 months ago
- Methods for detecting doublets in single-cell sequencing data☆180Updated last week
- ☆162Updated 5 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆171Updated 2 months ago
- Some tools for plotting single-cell data☆167Updated last month
- Scissor package☆205Updated 9 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- Gene set variation analysis☆210Updated this week
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- Gene set scoring for single-cell data☆143Updated 3 months ago
- Conversion between scRNA-seq objects☆159Updated 2 months ago
- Interfaces for HDF5-based Single Cell File Formats☆155Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆222Updated 11 months ago
- Scaling Single Cell Analysis to Millions of Cells☆179Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆353Updated 2 months ago