satijalab / seurat-data
Dataset distribution for Seurat
☆135Updated 2 weeks ago
Alternatives and similar repositories for seurat-data:
Users that are interested in seurat-data are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the SingleR package.☆184Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆247Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- Community-provided extensions to Seurat☆324Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆268Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆178Updated last month
- Some tools for plotting single-cell data☆167Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 3 months ago
- ☆226Updated 8 months ago
- Fast Wilcoxon and auROC☆175Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Interactively analyze single cell genomic data☆182Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆327Updated last week
- ☆163Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆196Updated 7 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆182Updated last month
- Methods for detecting doublets in single-cell sequencing data☆184Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- Interfaces for HDF5-based Single Cell File Formats☆160Updated last year
- Easy single cell analysis platform for enrichment☆165Updated this week
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.☆231Updated last week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆286Updated 10 months ago
- RNA velocity estimation in R☆186Updated last year
- Gene set scoring for single-cell data☆144Updated 4 months ago
- Gene set variation analysis☆212Updated this week
- Scissor package☆210Updated 10 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆223Updated last year
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago