Dataset distribution for Seurat
☆151Mar 6, 2025Updated last year
Alternatives and similar repositories for seurat-data
Users that are interested in seurat-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆331Jul 28, 2020Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 11 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R toolkit for single cell genomics☆2,689Mar 20, 2026Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆252Jan 10, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆236Feb 12, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Mar 9, 2026Updated 2 weeks ago
- Interfaces for HDF5-based Single Cell File Formats☆175Nov 4, 2023Updated 2 years ago
- RNA velocity estimation in Python☆174Oct 7, 2025Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆772Jan 6, 2024Updated 2 years ago
- ☆23Jul 9, 2025Updated 8 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆222Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆480Apr 5, 2024Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆76Nov 11, 2025Updated 4 months ago
- ☆65Aug 2, 2019Updated 6 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆630Nov 12, 2025Updated 4 months ago
- ☆33Mar 17, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆625Oct 10, 2025Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- ☆446Jan 8, 2026Updated 2 months ago
- Doublet detection in single-cell RNA-seq data.☆97Feb 6, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆236Aug 7, 2024Updated last year
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆34Jul 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆361Dec 9, 2021Updated 4 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆21Feb 2, 2026Updated last month
- R toolkit for the analysis of single-cell chromatin data☆409Updated this week
- A toolkit for single-cell immune profiling☆366Mar 9, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Updated this week
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 9 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago