Alternatives and similar repositories for seurat-data

Users that are interested in seurat-data are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated 2 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆186Updated 8 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆199Updated last month
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆281Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆229Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆211Updated 11 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆184Updated last month
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆264Updated this week
• navinlabcode / copykat
  ☆242Updated last year
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆165Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆201Updated 3 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆284Updated 2 years ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆243Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆225Updated 2 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆263Updated last year
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆232Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆172Updated last month
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆340Updated 7 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆168Updated last week
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆213Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆178Updated last year
• neurorestore / Libra
  ☆172Updated 2 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆154Updated 2 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆171Updated this week
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆298Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆158Updated last year