Alternatives and similar repositories for HiCeekR

Users that are interested in HiCeekR are comparing it to the libraries listed below

• yuelab / BUTLRTools
  ☆16Updated 8 years ago
• hochwagenlab / hwglabr2
  Collection of R functions used in the Hochwagen Lab
  ☆12Updated last month
• shenlab-sinai / GeneOverlap
  R package for testing and visualizing gene list overlaps
  ☆19Updated 9 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆30Updated last week
• salzman-lab / SICILIAN
  ☆23Updated last year
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• skandlab / MutSpot
  ☆16Updated 2 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆13Updated 5 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 4 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆41Updated 2 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated 2 weeks ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• jw156605 / SingleSplice
  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…
  ☆22Updated 9 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 5 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• vallotlab / ChromSCape
  ChromSCape
  ☆14Updated last month
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• wwylab / DeMixT
  ☆37Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago