R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface
☆16Jan 26, 2021Updated 5 years ago
Alternatives and similar repositories for HiCeekR
Users that are interested in HiCeekR are comparing it to the libraries listed below
Sorting:
- ☆16Mar 16, 2017Updated 8 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Package for analysis and characterization of differential TADs☆26Apr 25, 2022Updated 3 years ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Jan 21, 2022Updated 4 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- HiCDCPlus☆19Jun 6, 2022Updated 3 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Aug 22, 2025Updated 6 months ago
- ☆38Oct 25, 2018Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- R package for testing and visualizing gene list overlaps☆19Aug 22, 2016Updated 9 years ago
- Example vignette for dotdotdot software☆18Apr 9, 2021Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Nov 17, 2025Updated 3 months ago
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- ☆21Jan 1, 2022Updated 4 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Jun 17, 2025Updated 8 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 5 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- ☆48Mar 1, 2018Updated 8 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆24Nov 25, 2024Updated last year
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- ARCHIVED An R Interface to 'figshare'☆38May 10, 2022Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Jul 17, 2024Updated last year
- ☆33Feb 26, 2026Updated last week
- Extract data quickly from Juicebox via straw☆69Apr 6, 2025Updated 11 months ago
- Genome-wide contact analysis using sklearn☆72Mar 23, 2024Updated last year
- WashU Epigenome Browser☆76Mar 18, 2025Updated 11 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆74Dec 9, 2021Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago