lucidif / HiCeekR
R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface
☆16Updated 4 years ago
Alternatives and similar repositories for HiCeekR:
Users that are interested in HiCeekR are comparing it to the libraries listed below
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- ☆15Updated 8 years ago
- ☆12Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆15Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- iread☆24Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆17Updated 9 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Single-cell RNA Processing Software☆11Updated 6 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- ChromSCape☆14Updated last year
- ☆22Updated 11 months ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year