lucidif / HiCeekRLinks
R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface
☆16Updated 5 years ago
Alternatives and similar repositories for HiCeekR
Users that are interested in HiCeekR are comparing it to the libraries listed below
Sorting:
- ☆16Updated 8 years ago
- Analysis and visualization of RNA-Seq results☆30Updated last month
- ☆18Updated 2 years ago
- ☆25Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 6 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆26Updated last week
- R package for Flexible dot plots☆29Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆32Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆12Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆20Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆23Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago