lucidif / HiCeekRLinks
R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface
☆16Updated 4 years ago
Alternatives and similar repositories for HiCeekR
Users that are interested in HiCeekR are comparing it to the libraries listed below
Sorting:
- ChromSCape☆14Updated last week
- Collection of R functions used in the Hochwagen Lab☆12Updated this week
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ☆16Updated 8 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 2 months ago
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- ☆16Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆36Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 7 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- R package for testing and visualizing gene list overlaps☆19Updated 8 years ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- ☆12Updated 5 years ago
- iread☆25Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago