Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
☆46Sep 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for mascarade
Users that are interested in mascarade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- ☆20Jul 28, 2026Updated last month
- An R package designed to demultiplex cell hashing data☆32Sep 10, 2026Updated 2 weeks ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆110Dec 17, 2025Updated 9 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Aug 4, 2024Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- ☆33Feb 26, 2025Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆10Jan 22, 2026Updated 8 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆146Mar 13, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A computational framework☆20Jul 23, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆674Mar 4, 2026Updated 6 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆93Sep 3, 2026Updated 3 weeks ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆23May 20, 2024Updated 2 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- ☆22Mar 2, 2026Updated 6 months ago
- ☆11Aug 12, 2026Updated last month
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆49Oct 29, 2025Updated 10 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Mar 17, 2026Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆112Aug 3, 2026Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 8 months ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- LorMe package for R:Lightening One-code Resolving Microbial Ecology Program☆19Jul 20, 2026Updated 2 months ago
- Fast Gene Set Enrichment Analysis☆458Updated this week
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 6 months ago
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for Pathway RespOnsive GENe activity inference☆129Jan 30, 2023Updated 3 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆326Sep 19, 2026Updated last week
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Methods to discover gene programs on single-cell data☆211Sep 18, 2026Updated last week
- A package for reference mapping and nice visualization☆25Dec 16, 2025Updated 9 months ago