Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
☆45Mar 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for mascarade
Users that are interested in mascarade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- ☆21Aug 4, 2024Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- ☆33Feb 26, 2025Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆19May 20, 2024Updated last year
- ☆21Mar 2, 2026Updated 3 weeks ago
- ☆16May 22, 2025Updated 10 months ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆119Jan 30, 2023Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Mar 7, 2026Updated 2 weeks ago
- ☆16Apr 29, 2024Updated last year
- ImageJ macro for microglia morphology analysis☆17Mar 17, 2026Updated last week
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An R package designed to demultiplex cell hashing data☆31Feb 10, 2026Updated last month
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 3 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 8 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- ☆13Mar 13, 2026Updated last week
- Discovery of biological sequence motifs in R☆29Dec 20, 2018Updated 7 years ago
- An R package for visualising cell-cell interactions☆46Mar 16, 2026Updated last week
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- ☆17Nov 5, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆16Jul 9, 2024Updated last year
- ☆58Jan 2, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated 2 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 2 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆24Jun 28, 2024Updated last year
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ScaleBio Single-cell RNA Nextflow Workflow☆40Jul 2, 2025Updated 8 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆236Mar 14, 2026Updated last week
- Profile and Heatmap Visualization by Using ggplot2 and grid☆12Nov 21, 2023Updated 2 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆567Mar 4, 2026Updated 3 weeks ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 6 months ago