satijalab / seurat-wrappersLinks
Community-provided extensions to Seurat
☆349Updated 11 months ago
Alternatives and similar repositories for seurat-wrappers
Users that are interested in seurat-wrappers are comparing it to the libraries listed below
Sorting:
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆436Updated 8 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆504Updated 7 months ago
- ☆416Updated last month
- R toolkit for the analysis of single-cell chromatin data☆394Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆297Updated 3 years ago
- A toolkit for single-cell immune profiling☆354Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆307Updated 5 years ago
- ☆276Updated last year
- ☆255Updated last month
- High dimensional weighted gene co-expression network analysis☆443Updated 3 weeks ago
- ☆360Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆277Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆243Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆400Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆310Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆510Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆586Updated last month
- A package to help convert different single-cell data formats to each other☆445Updated last year
- ☆290Updated 3 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆227Updated 8 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆468Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆299Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆365Updated 3 months ago
- Tools and methods for analysis of single cell assay data in R☆257Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆490Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- Dataset distribution for Seurat☆148Updated 8 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 3 years ago