satijalab / seurat-wrappers
Community-provided extensions to Seurat
☆320Updated 2 months ago
Alternatives and similar repositories for seurat-wrappers:
Users that are interested in seurat-wrappers are comparing it to the libraries listed below
- R package for detecting doublets in single-cell RNA sequencing data☆439Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆398Updated last week
- ☆363Updated last month
- A toolkit for single-cell immune profiling☆325Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆513Updated 5 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆282Updated 4 years ago
- Dataset distribution for Seurat☆134Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆220Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆402Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆182Updated last month
- A package to help convert different single-cell data formats to each other☆405Updated 11 months ago
- Inferring CNV from Single-Cell RNA-Seq☆593Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆349Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆346Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆438Updated 8 months ago
- ☆353Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆375Updated 2 weeks ago
- ☆221Updated 7 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- Interpretation of cell states using reference single-cell maps☆263Updated 2 months ago
- ☆253Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆222Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆306Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆353Updated 2 months ago
- Interactively analyze single cell genomic data☆181Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆281Updated 9 months ago
- my notes for scATACseq analysis☆120Updated 9 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆547Updated 3 months ago