Alternatives and similar repositories for seurat-wrappers

Users that are interested in seurat-wrappers are comparing it to the libraries listed below

• cole-trapnell-lab / monocle3
  ☆415Updated last month
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆433Updated 8 months ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆501Updated 7 months ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆422Updated last month
• stuart-lab / signac
  R toolkit for the analysis of single-cell chromatin data
  ☆393Updated 2 weeks ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆306Updated 5 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆353Updated last week
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆296Updated 2 years ago
• Teichlab / cellphonedb
  ☆360Updated 3 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆276Updated last week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆240Updated 5 months ago
• navinlabcode / copykat
  ☆256Updated last week
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆438Updated last month
• IanevskiAleksandr / sc-type
  ☆275Updated 11 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆506Updated 2 weeks ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆310Updated last year
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆578Updated last week
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆398Updated last month
• cole-trapnell-lab / monocle-release
  ☆289Updated 3 years ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆225Updated 7 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆444Updated last year
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆331Updated this week
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆146Updated 7 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆360Updated 2 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆295Updated 2 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆297Updated last week
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆646Updated 8 months ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆320Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆226Updated 3 years ago