satijalab / seurat-wrappersLinks
Community-provided extensions to Seurat
☆346Updated 10 months ago
Alternatives and similar repositories for seurat-wrappers
Users that are interested in seurat-wrappers are comparing it to the libraries listed below
Sorting:
- ☆404Updated this week
- R toolkit for the analysis of single-cell chromatin data☆391Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 3 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆495Updated 6 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 7 months ago
- A toolkit for single-cell immune profiling☆347Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆293Updated 2 years ago
- ☆359Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆272Updated 2 weeks ago
- ☆289Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆569Updated 2 months ago
- ☆275Updated 10 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆308Updated last year
- ☆252Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆394Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆439Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆504Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysis☆432Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆235Updated 4 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆215Updated 6 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆460Updated 3 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆296Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆293Updated last month
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆467Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆225Updated 3 years ago
- Dataset distribution for Seurat☆145Updated 6 months ago