dosorio / rPanglaoDB
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
☆26Updated last year
Related projects ⓘ
Alternatives and complementary repositories for rPanglaoDB
- "Principles of Spatial Transcriptomics Analysis with Bioconductor" book☆39Updated 3 weeks ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 2 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- scWGCNA☆55Updated 2 years ago
- ☆37Updated 3 years ago
- ☆45Updated 9 months ago
- Various utility functions for Seurat single-cell analysis☆37Updated this week
- ☆21Updated 2 years ago
- ☆15Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- ☆42Updated 4 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆24Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- ☆37Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆37Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆32Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- ☆53Updated 3 years ago