cole-trapnell-lab / monocle3Links
☆415Updated last month
Alternatives and similar repositories for monocle3
Users that are interested in monocle3 are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆503Updated 7 months ago
- R toolkit for the analysis of single-cell chromatin data☆393Updated 2 weeks ago
- Community-provided extensions to Seurat☆348Updated 11 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆436Updated 8 months ago
- ☆360Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆581Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆422Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆486Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆353Updated last week
- A package to help convert different single-cell data formats to each other☆444Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆646Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆307Updated 5 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆602Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆441Updated last week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆310Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆399Updated last month
- ☆275Updated 11 months ago
- ☆257Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆360Updated 3 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆241Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆276Updated last week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆468Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆405Updated 3 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆508Updated 3 weeks ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆575Updated last year
- Useful functions to make your scRNA-seq plot more cool!☆362Updated 5 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆226Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- ☆290Updated 3 years ago