Alternatives and similar repositories for ShinyCell:

Users that are interested in ShinyCell are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆182Updated last month
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆242Updated last week
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆264Updated 2 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆181Updated this week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆180Updated this week
• rcastelo / GSVA
  Gene set variation analysis
  ☆210Updated this week
• huayc09 / SeuratExtend
  ☆120Updated this week
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆195Updated 4 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆121Updated 3 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆120Updated 9 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆176Updated this week
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆159Updated 2 weeks ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆224Updated 3 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆138Updated this week
• dviraran / xCell
  Cell types enrichment analysis
  ☆191Updated 8 months ago
• neurorestore / Libra
  ☆162Updated 5 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆180Updated last week
• navinlabcode / copykat
  ☆221Updated 7 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆263Updated 4 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 3 months ago
• IanevskiAleksandr / sc-type
  ☆253Updated 3 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆123Updated 2 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆225Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆155Updated last year
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆325Updated this week
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated 11 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆89Updated last year