Alternatives and similar repositories for ShinyCell

Users that are interested in ShinyCell are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated this week
• huayc09 / SeuratExtend
  ☆146Updated last week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated 2 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆168Updated last week
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆199Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 8 months ago
• neurorestore / Libra
  ☆172Updated 2 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆264Updated this week
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated 2 weeks ago
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆197Updated 9 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆284Updated 2 years ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆174Updated 3 weeks ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆221Updated 2 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆186Updated 8 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆217Updated 3 weeks ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆189Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆171Updated last week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆128Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆184Updated last month
• navinlabcode / copykat
  ☆242Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆211Updated 11 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆260Updated 4 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆165Updated last year
• IanevskiAleksandr / sc-type
  ☆269Updated 8 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆143Updated 3 years ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆130Updated last week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆229Updated 2 years ago