SGDDNB / ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
☆173Updated last year
Alternatives and similar repositories for ShinyCell:
Users that are interested in ShinyCell are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the SingleR package.☆184Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆246Updated this week
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Interactively analyze single cell genomic data☆182Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆181Updated last month
- ☆127Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 4 months ago
- Gene set variation analysis☆210Updated last week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆178Updated last month
- my notes for scATACseq analysis☆122Updated 10 months ago
- ☆163Updated 6 months ago
- Cell types enrichment analysis☆194Updated 9 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆185Updated this week
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆197Updated 5 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆270Updated 5 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆119Updated 4 years ago
- Dataset distribution for Seurat☆135Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆162Updated last month
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆141Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆268Updated 2 weeks ago
- ☆118Updated 6 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆83Updated 4 months ago
- Interfaces for HDF5-based Single Cell File Formats☆160Updated last year
- RNA velocity estimation in R☆186Updated last year
- ☆226Updated 8 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆286Updated 4 years ago