Shiny Interactive Web Apps for Single-Cell Data
☆215Apr 24, 2025Updated last year
Alternatives and similar repositories for ShinyCell
Users that are interested in ShinyCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial…☆63Jun 1, 2025Updated last year
- ☆185May 4, 2026Updated 2 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆491Apr 5, 2024Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆90Dec 4, 2025Updated 7 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆664Mar 11, 2026Updated 4 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 3 years ago
- Metacell - Single-cell mRNA Analysis☆121Jul 15, 2026Updated last week
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆666Jun 5, 2026Updated last month
- ☆364Dec 9, 2021Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- BANKSY: spatial clustering☆158May 30, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A toolkit for single-cell immune profiling☆373Jul 9, 2026Updated 2 weeks ago
- Gene set variation analysis☆247Updated this week
- Community-provided extensions to Seurat☆369Jun 29, 2026Updated 3 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- ☆59Jan 2, 2024Updated 2 years ago
- R toolkit for single cell genomics☆2,772Jul 14, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,813Jul 14, 2026Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆406Jun 16, 2026Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆226Mar 2, 2026Updated 4 months ago
- ☆299Jun 16, 2026Updated last month
- Various utility functions for Seurat v5 single-cell analysis☆70Jun 4, 2026Updated last month
- Tools for single-cell data processing☆137May 27, 2024Updated 2 years ago