sankaranlab / SCAVENGELinks
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
☆88Updated 2 years ago
Alternatives and similar repositories for SCAVENGE
Users that are interested in SCAVENGE are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆48Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- ☆63Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- ☆50Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- ☆41Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- ☆25Updated 2 years ago
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- scWGCNA☆61Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆62Updated 6 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆76Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- ☆59Updated last year