xinhe-lab / GSFA
R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
☆19Updated last year
Alternatives and similar repositories for GSFA:
Users that are interested in GSFA are comparing it to the libraries listed below
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 weeks ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Single-Cell Inference of Class Switch Recombination☆18Updated 7 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 8 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 4 months ago
- ☆50Updated 7 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆26Updated last month
- Hierarchical classification of cells☆23Updated 7 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆10Updated 5 months ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq