xinhe-lab / GSFALinks
R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
☆22Updated 2 years ago
Alternatives and similar repositories for GSFA
Users that are interested in GSFA are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- ☆20Updated 3 weeks ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated last month
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- ☆31Updated 7 months ago
- iterative clustering pipeline of big single cell datasets.☆34Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- benchmark for single-cell RNA-seq imputation methods☆28Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 4 months ago
- ☆41Updated 2 months ago
- ☆59Updated last year
- ☆58Updated 2 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆20Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year