R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
☆25Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for GSFA
Users that are interested in GSFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- ☆37Apr 16, 2025Updated 11 months ago
- Single-Cell Inference of Class Switch Recombination☆20Feb 11, 2026Updated last month
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- ☆17Apr 4, 2025Updated 11 months ago
- ☆36Feb 20, 2026Updated last month
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- ☆40Aug 29, 2025Updated 6 months ago
- This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data☆10Jan 29, 2020Updated 6 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆16Sep 27, 2024Updated last year
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆16May 25, 2025Updated 9 months ago
- Multiome GRN inference.☆133Apr 19, 2024Updated last year
- ☆19Nov 24, 2024Updated last year
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- A new model and algorithm for multivariate Bayesian variable selection regression.☆26Updated this week
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated 2 months ago
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆29Nov 8, 2020Updated 5 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆140Aug 14, 2024Updated last year
- ☆24Aug 20, 2024Updated last year
- ☆127Updated this week
- ☆25Sep 2, 2024Updated last year
- ☆14Aug 9, 2017Updated 8 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆64Apr 14, 2024Updated last year
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆86Feb 16, 2026Updated last month
- ☆27Mar 18, 2022Updated 4 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- Antibody-Specific Epitope Mapping☆17Sep 10, 2025Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 4 months ago
- Source code for integrative nonnegative matrix factorization☆19Jul 12, 2018Updated 7 years ago
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 5 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- ☆31May 4, 2025Updated 10 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 6 years ago