R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
☆25Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for GSFA
Users that are interested in GSFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 2, 2022Updated 4 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- ☆39Apr 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 5 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- ☆19May 29, 2026Updated last month
- ☆17Dec 3, 2025Updated 7 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆38Jun 8, 2026Updated last month
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆15Oct 20, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆40Aug 29, 2025Updated 10 months ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data☆10Apr 10, 2026Updated 3 months ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆18May 25, 2025Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated last month
- ☆18Nov 24, 2024Updated last year
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆22Jan 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆18Aug 12, 2022Updated 3 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆29Nov 8, 2020Updated 5 years ago
- ☆132Jul 11, 2026Updated last week
- ☆24Aug 20, 2024Updated last year
- ☆31Mar 18, 2022Updated 4 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Aug 9, 2017Updated 8 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- ☆25Sep 2, 2024Updated last year
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆86May 22, 2026Updated 2 months ago
- causal TWAS (cTWAS)☆51May 7, 2026Updated 2 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- ☆19Jul 8, 2021Updated 5 years ago