alexw16 / gridnet
☆13Updated 2 months ago
Alternatives and similar repositories for gridnet:
Users that are interested in gridnet are comparing it to the libraries listed below
- ☆17Updated 3 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 8 months ago
- a unified single-cell data integration framework by optimal transport☆35Updated 5 months ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆15Updated last month
- ☆74Updated last year
- ☆10Updated last year
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆19Updated 5 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- ☆11Updated 3 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 5 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 5 months ago
- ☆18Updated 5 months ago
- Deep joint-leaning single-cell multi-omics model☆16Updated 2 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 4 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆30Updated last month
- Single cell joint embedding and modality prediction with autoencoder☆9Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure☆16Updated 6 months ago
- ☆38Updated 2 years ago
- ☆29Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆28Updated last week
- ☆53Updated 11 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆56Updated last year
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated 9 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- ☆16Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆14Updated last month
- Single-cell biological network inference using a heterogeneous graph transformer☆72Updated last month