One-Biosciences / MAYA
☆24Updated 8 months ago
Alternatives and similar repositories for MAYA:
Users that are interested in MAYA are comparing it to the libraries listed below
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- ☆40Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 4 months ago
- Removing empty droplets in multiome datasets☆16Updated 10 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Functional Inference of Gene Regulation☆42Updated 9 months ago
- ☆30Updated 2 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆16Updated 9 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated this week
- scWGCNA☆59Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 9 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆19Updated 3 weeks ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago