One-Biosciences / MAYA
☆23Updated 8 months ago
Alternatives and similar repositories for MAYA
Users that are interested in MAYA are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- ☆31Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆40Updated 4 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated 2 weeks ago
- Removing empty droplets in multiome datasets☆16Updated 11 months ago
- cell type specific, trait-associated gene regulation☆25Updated last month
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆22Updated 3 weeks ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆78Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 2 weeks ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆55Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 3 weeks ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago