wanglabtongji / SCRIPLinks
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
☆20Updated 11 months ago
Alternatives and similar repositories for SCRIP
Users that are interested in SCRIP are comparing it to the libraries listed below
Sorting:
- ☆49Updated 10 months ago
- ☆32Updated 5 months ago
- ☆30Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- scWGCNA☆61Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆17Updated last year
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- ☆20Updated 9 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆12Updated 2 years ago
- ☆34Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆32Updated 6 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆28Updated 8 months ago