Alternatives and similar repositories for SCRIP

Users that are interested in SCRIP are comparing it to the libraries listed below

• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 10 months ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• gxiaolab / scAllele
  ☆34Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆45Updated last year
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆68Updated 9 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• chensujun / scRNA
  ☆32Updated 3 years ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆52Updated 3 weeks ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• WanluLiuLab / scAtlasVAE
  ☆36Updated 2 weeks ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 7 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 8 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• snehamitra / SCARlink
  ☆54Updated 2 weeks ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆80Updated last year
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated 2 weeks ago
• McGranahanLab / ImmuneLENS
  ☆14Updated 4 months ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated 2 months ago