kundajelab / ENCODE_scatacLinks
☆11Updated 2 years ago
Alternatives and similar repositories for ENCODE_scatac
Users that are interested in ENCODE_scatac are comparing it to the libraries listed below
Sorting:
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Updated 2 years ago
- ☆11Updated 2 years ago
- ☆12Updated 4 years ago
- ☆19Updated 4 years ago
- single-cell Nucleosome Methylation Transcription☆15Updated 7 years ago
- Perturb-seq analysis package☆16Updated last year
- ☆16Updated 10 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- BPNet manuscript code.☆12Updated 5 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Updated last year
- Breast Cancer Single Cell Atlas☆12Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Updated 3 weeks ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 8 months ago
- ☆18Updated 3 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆12Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year