kundajelab / ENCODE_scatacView external linksLinks
☆12Jan 31, 2023Updated 3 years ago
Alternatives and similar repositories for ENCODE_scatac
Users that are interested in ENCODE_scatac are comparing it to the libraries listed below
Sorting:
- Universal Single-Cell Genomics Preprocessing package☆48Feb 2, 2026Updated last week
- ☆10Aug 29, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23May 14, 2025Updated 9 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Scripts for building computational models of gene regulation with tensorflow☆11Jan 21, 2020Updated 6 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- ☆14Jun 4, 2023Updated 2 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 5 years ago
- comprehensive analysis of single-cell transcriptomics data☆25Dec 17, 2025Updated last month
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆18Aug 28, 2025Updated 5 months ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- ☆18Oct 21, 2024Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆20Oct 7, 2021Updated 4 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- ☆19Mar 21, 2024Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- ☆21Jun 29, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- ☆23Mar 29, 2023Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- ☆22May 6, 2022Updated 3 years ago
- Peak caller for CUT&TAG data☆30Aug 18, 2022Updated 3 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆24Sep 5, 2023Updated 2 years ago