fl-yu / CUT-RUNTools-2.0
CUT&RUN and CUT&Tag data processing and analysis
☆99Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for CUT-RUNTools-2.0
- A guide to using a Seurat object in conjunction with RNA Velocity☆132Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- ☆102Updated 6 months ago
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆112Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆186Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago
- ☆93Updated 4 years ago
- ☆153Updated 2 months ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆63Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆143Updated last year
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆80Updated last year
- ☆210Updated 4 months ago
- Quantifying metabolism activity at the single-cell resolution☆115Updated 3 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- scATAC-seq data analysis tools and papers☆98Updated last year
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆72Updated last month
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- ☆25Updated last year
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- ☆59Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆259Updated 2 years ago
- Scissor package☆189Updated 6 months ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆184Updated 7 months ago
- Highly specific clustering of T cell receptor CDR3s☆42Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- Gene set scoring for single-cell data☆137Updated 2 weeks ago