Alternatives and similar repositories for cafeh

Users that are interested in cafeh are comparing it to the libraries listed below

• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated last month
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated last week
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆39Updated 2 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆19Updated last month
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆19Updated 10 years ago
• FinucaneLab / gene_features
  ☆36Updated last year
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆14Updated 3 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated this week
• single-cell-genetics / limix_qtl
  ☆20Updated 4 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• yanglab-emory / TIGAR
  ☆22Updated 2 months ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 8 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆12Updated 8 months ago