s175573 / iSMARTLinks
Highly specific clustering of T cell receptor CDR3s
☆43Updated 3 years ago
Alternatives and similar repositories for iSMART
Users that are interested in iSMART are comparing it to the libraries listed below
Sorting:
- Ultrafast TCR clustering algorithm based on geometric isometry☆71Updated last year
- Using TCR and expression for sequence embedding☆62Updated 3 weeks ago
- ☆56Updated last year
- Gene group activity utility functions for Scanpy☆100Updated last year
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆91Updated 2 years ago
- ☆25Updated 3 years ago
- flexible CDR based distance metrics☆69Updated last month
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated last year
- ☆45Updated 2 years ago
- Single cell omics biology annotations☆53Updated 9 months ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆49Updated 2 weeks ago
- R package to access DoRothEA's regulons☆154Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Updated 3 years ago
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- ☆41Updated 7 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆94Updated 5 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆32Updated last month
- A tool for semi-automatic cell type harmonization and integration☆117Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Updated last year
- ☆60Updated 3 weeks ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆69Updated last year
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆13Updated 5 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- Accurate and fast cell marker gene identification with COSG☆54Updated 2 weeks ago