A tidy interface for coverage analysis
☆33Feb 18, 2020Updated 6 years ago
Alternatives and similar repositories for superintronic
Users that are interested in superintronic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- A grammar of genomic data transformation☆154Jun 3, 2026Updated last week
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆65Mar 19, 2026Updated 2 months ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 4 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- ☆24Feb 22, 2023Updated 3 years ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 2 weeks ago
- ☆19May 31, 2024Updated 2 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆14May 20, 2026Updated 3 weeks ago
- The blog of tidyomics☆13Jul 12, 2025Updated 11 months ago
- Benchmark of GRNs using the GRETA pipeline☆33Updated this week
- Explore the cancer relevance of your gene list☆54May 31, 2026Updated 2 weeks ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 7 months ago
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆20Oct 5, 2025Updated 8 months ago
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 4 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Visualizing transcript structure and annotation using ggplot2☆168Aug 24, 2024Updated last year
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆15Nov 22, 2022Updated 3 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆32Sep 30, 2025Updated 8 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆24Feb 28, 2023Updated 3 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆24Jun 1, 2026Updated last week
- Exon-Intron Split Analysis (EISA) in R☆17Apr 29, 2026Updated last month
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 10 months ago
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- Implementation of the matrixStats API for sparse matrices☆55Apr 2, 2025Updated last year
- Creating package to draw proteins from Uniprot API☆35Feb 2, 2026Updated 4 months ago
- ☆19Mar 8, 2026Updated 3 months ago
- Clone of the Bioconductor repository for the basilisk package.☆29Nov 8, 2025Updated 7 months ago