kstreet13 / scryLinks
Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
☆21Updated last year
Alternatives and similar repositories for scry
Users that are interested in scry are comparing it to the libraries listed below
Sorting:
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Gene-level general linear mixed model☆23Updated 2 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆19Updated last month
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 7 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Extension of SpatialExperiment with sf☆56Updated last week
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆21Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 4 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 11 months ago
- Collection of useful methods for single cell analysis☆14Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated last month
- R API and htmlwidget for Vitessce☆44Updated 3 months ago
- An R package for visualising cell-cell interactions☆43Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- Automatic selection of number of principal components☆17Updated 3 years ago
- ☆11Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago