sigven / vcf2tsvpyLinks
Genomic VCF to tab-separated values
☆48Updated 2 years ago
Alternatives and similar repositories for vcf2tsvpy
Users that are interested in vcf2tsvpy are comparing it to the libraries listed below
Sorting:
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- ☆35Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago