sigven / vcf2tsvpy
Genomic VCF to tab-separated values
☆47Updated last year
Related projects ⓘ
Alternatives and complementary repositories for vcf2tsvpy
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- Codes and Data for FFPEsig manuscript☆15Updated 9 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆16Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- ☆23Updated 2 months ago
- Website to analyze conflicting assertions in ClinVar☆16Updated 8 months ago
- (WIP) best-practices workflow for rare disease☆58Updated 4 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- TIDDIT - structural variant calling☆69Updated 3 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Deep learning-based structural variant filtering method☆35Updated 11 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Generic human DNA variant annotation pipeline☆56Updated 8 months ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated 11 months ago
- Example project for integrating igv.js and flask☆26Updated last month
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- ☆23Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆24Updated 10 months ago