Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI
☆22Oct 5, 2025Updated last year
Alternatives and similar repositories for parse_pipeline
Users that are interested in parse_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆23Oct 8, 2026Updated last week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆18Jul 6, 2026Updated 3 months ago
- Course of Machine Learning for Biomedical Data -TECNUN University of Navarra☆12Apr 21, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated 11 months ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- AI-powered IDE for bioinformatics — built by biologists, for biologists☆99Updated this week
- ☆28Updated this week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆28Oct 2, 2025Updated last year
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- ☆12Oct 5, 2026Updated last week
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Jul 21, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated last year
- ☆20Jan 23, 2026Updated 8 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆38Jul 11, 2025Updated last year
- ☆79May 27, 2026Updated 4 months ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Jun 27, 2020Updated 6 years ago
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Jan 7, 2026Updated 9 months ago
- ☆16Feb 28, 2025Updated last year
- The Genome Analysis Tutorial Page.☆12Oct 5, 2019Updated 7 years ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆15Aug 18, 2026Updated last month
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- This repository contains all containers that WARP uses.☆16Oct 9, 2026Updated last week
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- ☆12Aug 30, 2024Updated 2 years ago
- ☆26Aug 24, 2025Updated last year
- ☆15Dec 19, 2022Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Tensorflow implementation for the Class-wise Selective Rationalization☆14Feb 15, 2023Updated 3 years ago
- ☆48Jun 27, 2023Updated 3 years ago