Alternatives and similar repositories for parse_pipeline

Users that are interested in parse_pipeline are comparing it to the libraries listed below

• PierreBSC / Viral-Track
  ☆63Updated 5 years ago
• tuonglab / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package
  ☆124Updated this week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆119Updated 3 years ago
• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆83Updated last week
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆132Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆62Updated last month
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆26Updated last week
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆27Updated 3 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆57Updated 4 years ago
• buenrostrolab / scPrinter
  ☆58Updated 2 weeks ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆120Updated last year
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆103Updated 3 months ago
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆38Updated last year
• mhorlbeck / ScreenProcessing
  ☆70Updated 2 years ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆157Updated 3 months ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆77Updated 4 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆155Updated last year
• liulab-dfci / RIMA_pipeline
  ☆90Updated 5 months ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆34Updated 5 years ago
• fairliereese / LR-splitpipe
  Demultiplexing and debarcoding tool designed for LR-Split-seq data.
  ☆24Updated 2 years ago
• caleblareau / mgatk
  mgatk: mitochondrial genome analysis toolkit
  ☆110Updated last year
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 9 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 5 years ago
• gexijin / idepGolem
  ☆43Updated 2 months ago