Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI
☆18Oct 5, 2025Updated 5 months ago
Alternatives and similar repositories for parse_pipeline
Users that are interested in parse_pipeline are comparing it to the libraries listed below
Sorting:
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 4 months ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆24Oct 19, 2023Updated 2 years ago
- A tidy interface for coverage analysis☆32Feb 18, 2020Updated 6 years ago
- ☆32Jan 7, 2026Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 6 months ago
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated 8 months ago
- ☆40Feb 21, 2026Updated last week
- ☆50Feb 6, 2026Updated last month
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 6 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Jan 22, 2026Updated last month
- ☆45Jun 27, 2023Updated 2 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Feb 5, 2026Updated last month
- This project serves as a comprehensive guide to performing football analysis using Python. You can view Live Demo :☆16Apr 14, 2023Updated 2 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Biwhitened PCA☆14Feb 3, 2026Updated last month
- Jupyter notebook based multiplex image processing pipeline.☆10Feb 27, 2026Updated last week
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Free e-books, built from markdown☆11Jul 15, 2024Updated last year
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 4 months ago
- ☆11Oct 28, 2025Updated 4 months ago
- From metagenomes to epitopes and beyond☆12Feb 20, 2026Updated 2 weeks ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Do we need rebalancing strategies? A theoretical and empirical study around SMOTE and its variants (Sakho, Malherbe and Scornet; 2024)☆11Sep 2, 2025Updated 6 months ago
- ☆15Mar 13, 2024Updated last year
- ☆15Feb 6, 2026Updated last month
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- ☆10Apr 30, 2019Updated 6 years ago
- ☆12May 29, 2024Updated last year
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12May 30, 2022Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- MicrobeRX☆16Aug 11, 2025Updated 6 months ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆17Jun 21, 2024Updated last year
- edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also include…☆42Updated this week
- Physalia course Machine Learning for Multi-Omics Integration☆18Jun 11, 2025Updated 8 months ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 2 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated last week