Alternatives and similar repositories for learn2count

Users that are interested in learn2count are comparing it to the libraries listed below

• lucylgao / clusterpval
  ☆17Updated 2 years ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆84Updated last month
• raysinensis / color_repel
  Repel Visually Similar Colors for Colorblind Users (CRAN)
  ☆10Updated 4 months ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• LTLA / TileDBArray
  Clone of the Bioconductor repository for the TileDBArray package.
  ☆11Updated 5 months ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 4 months ago
• SaskiaFreytag / schex
  ☆74Updated last year
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 8 months ago
• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆15Updated 11 months ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 8 months ago
• AdrianListon / Cross-Entropy-test
  Simplified script for applying the t-SNE diff method on high parameter flow cytometry data
  ☆11Updated 2 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• stemangiola / tidygate
  Label elements within user drawn gates
  ☆25Updated 2 months ago
• girke-lab / drugbankR
  R package for querying the DrugBank database in batch locally
  ☆37Updated 4 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆56Updated this week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 2 months ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated 11 months ago
• crj32 / M3C
  Monte Carlo Reference-based Consensus Clustering
  ☆36Updated 5 years ago
• drighelli / SpatialExperiment
  ☆71Updated 6 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated last month
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated 2 years ago
• neurogenomics / rworkflows
  Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
  ☆81Updated last week
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 2 years ago
• Bioconductor / bioconductor_full
  [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages
  ☆25Updated 2 years ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆12Updated 3 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 4 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆17Updated 3 years ago