Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data
☆17Sep 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for scDiagnostics
Users that are interested in scDiagnostics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 7 months ago
- ☆22Jul 7, 2026Updated 3 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆103Jul 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- notebook repository☆12Jan 17, 2022Updated 4 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- ☆10May 31, 2022Updated 4 years ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆12Dec 11, 2025Updated 10 months ago
- Volcano plots for differential expression in R. Reads DESeq2, edgeR and limma output directly; highlight genes of interest and compose ge…☆73Jul 5, 2026Updated 3 months ago
- R package to analyze single cell DNA sequencing data.☆11Sep 24, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- long read RNA-seq quantification☆125Oct 4, 2026Updated last week
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- A tidy interface for coverage analysis☆33Feb 18, 2020Updated 6 years ago
- Material for the Shiny in Production: Tools and Techniques Workshop - posit::conf(2023)☆18Sep 18, 2023Updated 3 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Frontend for Anthropic token counting API. Check the token counts of text, text files, PDFs, and images. Compare token count vs. Gemini a…☆20Jul 12, 2026Updated 3 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 2 months ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 11 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- ☆39Aug 6, 2026Updated 2 months ago
- ☆18Apr 18, 2024Updated 2 years ago
- Deep Generative Modeling of RNA Velocity☆40Oct 21, 2025Updated 11 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- ☆21Apr 20, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 3 months ago
- ☆10Apr 28, 2023Updated 3 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- TELOmere SEARCH in Long sequencing Reads☆15Dec 26, 2025Updated 9 months ago