ccb-hms / scDiagnostics
Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data
☆9Updated last month
Alternatives and similar repositories for scDiagnostics:
Users that are interested in scDiagnostics are comparing it to the libraries listed below
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- ☆29Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆30Updated 2 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆17Updated 5 months ago
- ☆16Updated 9 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- Cell type pipes for R☆51Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated 11 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆18Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago