Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data
☆13Jan 25, 2026Updated 2 months ago
Alternatives and similar repositories for scDiagnostics
Users that are interested in scDiagnostics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 10 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 3 weeks ago
- ☆21Jul 7, 2025Updated 8 months ago
- notebook repository☆12Jan 17, 2022Updated 4 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- Latent Embedding Multivariate Regression☆100Updated this week
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 7 years ago
- ☆10May 31, 2022Updated 3 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 8 months ago
- Material for the Shiny in Production: Tools and Techniques Workshop - posit::conf(2023)☆18Sep 18, 2023Updated 2 years ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆68Jan 19, 2026Updated 2 months ago
- ☆35Mar 17, 2026Updated last week
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- A tidy interface for coverage analysis☆32Feb 18, 2020Updated 6 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- long read RNA-seq quantification☆106Mar 16, 2026Updated last week
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆53Feb 19, 2026Updated last month
- Explore the Hi-Cs☆11Nov 30, 2025Updated 3 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- Scaling Single Cell Analysis to Millions of Cells☆271Jan 13, 2026Updated 2 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated last year
- Align sequences and then parse features.☆17Oct 24, 2025Updated 5 months ago
- ☆11Nov 12, 2025Updated 4 months ago
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆10Dec 11, 2025Updated 3 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- ☆18Apr 18, 2024Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- ☆21Feb 1, 2026Updated last month
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Updated this week
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Mar 5, 2026Updated 2 weeks ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- Genomics data re-analysis☆23Updated this week
- ☆13Feb 17, 2022Updated 4 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 7 months ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- ☆10Apr 28, 2023Updated 2 years ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago