Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data
☆14Jul 7, 2026Updated last month
Alternatives and similar repositories for scDiagnostics
Users that are interested in scDiagnostics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Nanopore sequencing data for Genotype and Phenotype☆61May 15, 2025Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 5 months ago
- ☆21Jul 7, 2026Updated last month
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆102Jul 29, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- notebook repository☆13Jan 17, 2022Updated 4 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 weeks ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- ☆10May 31, 2022Updated 4 years ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆73Jul 5, 2026Updated last month
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆12Dec 11, 2025Updated 8 months ago
- R package to analyze single cell DNA sequencing data.☆11Jul 29, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- long read RNA-seq quantification☆120Aug 4, 2026Updated last week
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- A tidy interface for coverage analysis☆33Feb 18, 2020Updated 6 years ago
- Material for the Shiny in Production: Tools and Techniques Workshop - posit::conf(2023)☆18Sep 18, 2023Updated 2 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Frontend for Anthropic token counting API. Check the token counts of text, text files, PDFs, and images. Compare token count vs. Gemini a…☆19Jul 12, 2026Updated last month
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last week
- Align sequences and then parse features.☆17Oct 24, 2025Updated 9 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- ☆37Aug 6, 2026Updated last week
- ☆18Apr 18, 2024Updated 2 years ago
- Deep Generative Modeling of RNA Velocity☆39Oct 21, 2025Updated 9 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- ☆21Apr 20, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated last month
- ☆10Apr 28, 2023Updated 3 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆22Updated this week