clintval / cvbioLinks
Artisanal 🤣 bioinformatics tools and pipelines in Scala
☆20Updated 5 years ago
Alternatives and similar repositories for cvbio
Users that are interested in cvbio are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 5 months ago
- ☆14Updated 3 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆22Updated 2 years ago
- Customer workshop materials☆18Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 6 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 2 years ago
- sort genomic data☆36Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago