clintval / cvbioLinks
Artisanal 🤣 bioinformatics tools and pipelines in Scala
☆20Updated 5 years ago
Alternatives and similar repositories for cvbio
Users that are interested in cvbio are comparing it to the libraries listed below
Sorting:
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆22Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 4 months ago
- ☆12Updated 2 months ago
- Allele frequency filter app☆14Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Customer workshop materials☆18Updated 2 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Bedfile perturbation tool☆17Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- ☆21Updated 3 weeks ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆14Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago