Artisanal 🤣 bioinformatics tools and pipelines in Scala
☆20Jan 28, 2020Updated 6 years ago
Alternatives and similar repositories for cvbio
Users that are interested in cvbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Mar 11, 2026Updated last week
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆21Feb 10, 2026Updated last month
- ☆19May 10, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Prefix Filter: Practically and Theoretically Better Than Bloom.☆49Sep 12, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- ☆12Dec 1, 2021Updated 4 years ago
- Static Huffman coding☆10Apr 3, 2017Updated 8 years ago
- ☆14Jun 3, 2022Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆67Mar 14, 2024Updated 2 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 4 months ago
- ☆14Aug 9, 2016Updated 9 years ago
- ☆16Jan 6, 2023Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- A Python implementation of edgeR for differential expression analysis☆104Mar 21, 2019Updated 7 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated last year
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- A tidy interface for coverage analysis☆32Feb 18, 2020Updated 6 years ago
- ALFA: Annotation Landscape for Aligned Reads☆14Jun 30, 2020Updated 5 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago