csoneson / NativeRNAseqComplexTranscriptomeLinks
Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
☆19Updated 5 years ago
Alternatives and similar repositories for NativeRNAseqComplexTranscriptome
Users that are interested in NativeRNAseqComplexTranscriptome are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- ☆16Updated 8 years ago
- Galaxy Docker Image for the HiCExplorer☆10Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆35Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- ☆36Updated last year
- CircRNA testing and ploting R package☆10Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- A framework to infer mutational signatures in cancer over time☆53Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Published at Bioinformatics☆12Updated last year