csoneson / NativeRNAseqComplexTranscriptomeLinks
Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
☆19Updated 6 years ago
Alternatives and similar repositories for NativeRNAseqComplexTranscriptome
Users that are interested in NativeRNAseqComplexTranscriptome are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 5 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- ☆16Updated 8 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 3 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- epigenome analysis to rank transcription factors☆14Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago