KaiAragaki / tidyestimateLinks
ESTIMATE tumor infiltration, the tidy way
☆16Updated last year
Alternatives and similar repositories for tidyestimate
Users that are interested in tidyestimate are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- ☆10Updated 2 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- R package☆22Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 weeks ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆12Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆14Updated this week
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 2 months ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 8 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆18Updated last year
- ☆16Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 7 months ago