guigolab / ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
☆129Updated 10 months ago
Alternatives and similar repositories for ggsashimi:
Users that are interested in ggsashimi are comparing it to the libraries listed below
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Generate IGV style locus tracks from bigWig files in R☆158Updated 6 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Visualizing transcript structure and annotation using ggplot2☆154Updated 8 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆83Updated 3 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated last week
- A tool for bigWig files.☆119Updated 6 years ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated 10 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆134Updated last week
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆84Updated this week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆164Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- ☆144Updated 3 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A factor analysis package☆100Updated 12 years ago
- ASCAT R package☆180Updated last month
- R package for genomic feature analysis and visualization☆76Updated 3 weeks ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated this week
- A short tutorial on how to use RSEM☆136Updated 5 years ago