Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
☆16May 17, 2022Updated 3 years ago
Alternatives and similar repositories for BRCA-LRseq-pipeline
Users that are interested in BRCA-LRseq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆64Mar 19, 2026Updated last month
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 9 months ago
- ☆55Aug 1, 2024Updated last year
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 4 months ago
- ☆35Mar 17, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆33Nov 9, 2022Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 2 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆58May 15, 2025Updated 11 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated 11 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆130Apr 10, 2026Updated 3 weeks ago
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated last month
- ☆36Mar 31, 2026Updated last month
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 9 months ago
- ☆27May 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆36Apr 17, 2026Updated 2 weeks ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 7 months ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 31, 2026Updated last month
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- ☆25Feb 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆53Updated this week
- The Isoforms from Single-Cell; Long-read Expression Suite☆39Jan 14, 2025Updated last year
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- ☆16Apr 18, 2025Updated last year
- ☆16Sep 21, 2021Updated 4 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆56Jan 12, 2026Updated 3 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆18Updated this week
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 9 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- ☆21Apr 20, 2026Updated 2 weeks ago
- Long-read Isoform Quantification and Analysis☆39Mar 25, 2025Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆23Nov 28, 2025Updated 5 months ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆58Jun 29, 2023Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 3 months ago