TheJacksonLaboratory / BRCA-LRseq-pipeline
Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
☆14Updated 2 years ago
Alternatives and similar repositories for BRCA-LRseq-pipeline:
Users that are interested in BRCA-LRseq-pipeline are comparing it to the libraries listed below
- SCASA: Single cell transcript quantification tool☆21Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆12Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆22Updated 10 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆14Updated last year
- ☆20Updated last year
- ☆16Updated last year
- ☆23Updated 2 years ago
- ☆15Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆49Updated 8 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 3 weeks ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆17Updated 10 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago