Alternatives and similar repositories for AFDB90v4

Users that are interested in AFDB90v4 are comparing it to the libraries listed below

• JudeWells / chainsaw
  ☆40Updated 9 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated last month
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆22Updated 2 weeks ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 5 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 2 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 3 weeks ago
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆12Updated 2 weeks ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated last month
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 5 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 6 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated 3 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆22Updated last week
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆25Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 6 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆41Updated last month
• DunbrackLab / ProtCID
  Protein common interface databases
  ☆9Updated 6 years ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 3 weeks ago
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆21Updated 2 years ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 10 months ago
• proteinphysiologylab / frustratometeR
  ☆36Updated this week
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year