Alternatives and similar repositories for AFDB90v4

Users that are interested in AFDB90v4 are comparing it to the libraries listed below

• JudeWells / chainsaw
  ☆43Updated 11 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated 4 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆45Updated 4 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 5 months ago
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 9 months ago
• lehner-lab / domainome
  ☆15Updated 9 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆44Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆22Updated 3 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• jtrinquier / SoftAlign
  ☆27Updated last month
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆25Updated 3 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆13Updated this week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• TurtleTools / portein
  2D portraits of 3D protein structures
  ☆25Updated 3 weeks ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆27Updated 6 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆50Updated last month
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆29Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 8 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆30Updated 2 years ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago