AlvaroRodriguezDelRio / nov-fams-pipelineLinks
☆11Updated 10 months ago
Alternatives and similar repositories for nov-fams-pipeline
Users that are interested in nov-fams-pipeline are comparing it to the libraries listed below
Sorting:
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 months ago
- ☆17Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆23Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- ☆22Updated 3 years ago
- Repository for general metagenomics Nextflow pipeline☆24Updated last week
- Viral protein family functional prediction using protein language models☆21Updated 2 weeks ago
- Virus Identification☆25Updated 7 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- This is a repository for CAMPER.☆16Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- ☆33Updated 3 months ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- metabolic heatmap☆22Updated 6 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Updated 2 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- ☆17Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated this week
- ☆42Updated 7 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year