AlvaroRodriguezDelRio / nov-fams-pipelineLinks
☆11Updated 8 months ago
Alternatives and similar repositories for nov-fams-pipeline
Users that are interested in nov-fams-pipeline are comparing it to the libraries listed below
Sorting:
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- ☆21Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- This is a repository for CAMPER.☆15Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- ☆17Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆23Updated this week
- Integrative virome pipeline☆13Updated last year
- metabolic heatmap☆21Updated 6 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 10 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Updated 4 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆78Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Viral protein family functional prediction using protein language models☆21Updated last year
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆26Updated 2 weeks ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆21Updated 3 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆16Updated 3 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 6 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆22Updated 5 months ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 5 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 9 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago