AlvaroRodriguezDelRio / nov-fams-pipeline
☆11Updated 2 months ago
Alternatives and similar repositories for nov-fams-pipeline
Users that are interested in nov-fams-pipeline are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- ☆17Updated 2 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆13Updated 2 years ago
- Integrative virome pipeline☆13Updated 6 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆12Updated last month
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated last month
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆21Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆22Updated 3 weeks ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- The viral taxonomic assignment pipeline☆20Updated 2 months ago
- metabolic heatmap☆20Updated 6 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 3 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆13Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆18Updated last week
- ☆18Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆34Updated 2 months ago
- ☆32Updated last year
- ☆22Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 2 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year