AlvaroRodriguezDelRio / nov-fams-pipelineLinks
☆11Updated 3 months ago
Alternatives and similar repositories for nov-fams-pipeline
Users that are interested in nov-fams-pipeline are comparing it to the libraries listed below
Sorting:
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆16Updated 2 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- ☆21Updated 3 years ago
- ☆17Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆23Updated 2 years ago
- metabolic heatmap☆20Updated 6 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆14Updated 10 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆17Updated 4 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 4 months ago
- Viral protein family functional prediction using protein language models☆19Updated last year
- Repository for general metagenomics Nextflow pipeline☆16Updated this week
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆25Updated 2 months ago
- ☆18Updated 4 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated last week
- Integrative virome pipeline☆13Updated 7 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 4 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆14Updated 2 years ago
- ☆32Updated 4 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 7 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆38Updated 9 months ago