Lightweight python library for predicting the difficulty of alignments in phylogenetics
☆23Dec 6, 2025Updated 4 months ago
Alternatives and similar repositories for PyPythia
Users that are interested in PyPythia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆10Mar 26, 2026Updated last month
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated last year
- ☆14Mar 18, 2025Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- ☆16Apr 11, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆38Jan 3, 2026Updated 3 months ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆35Jun 30, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆39Updated this week
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 10 months ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated last year
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 4 months ago
- spruceup☆25Aug 15, 2025Updated 8 months ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆39Updated this week
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆11Sep 11, 2023Updated 2 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Mar 27, 2026Updated last month
- Text project for theoretical primer on human evolutionary ecology☆36Nov 12, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ggDoubleHeat: A heatmap-like visualization tool☆15Sep 12, 2025Updated 7 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Implementation of GP-BART algorithm.☆17Dec 28, 2023Updated 2 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 4 months ago