Lightweight python library for predicting the difficulty of alignments in phylogenetics
☆21Dec 6, 2025Updated 4 months ago
Alternatives and similar repositories for PyPythia
Users that are interested in PyPythia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated last year
- ☆14Mar 18, 2025Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆37Jan 3, 2026Updated 3 months ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 5 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆34Jun 30, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 9 months ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated 11 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆18Updated this week
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- spruceup☆25Aug 15, 2025Updated 7 months ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆39Mar 27, 2026Updated 2 weeks ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆11Sep 11, 2023Updated 2 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Mar 27, 2026Updated 2 weeks ago
- Text project for theoretical primer on human evolutionary ecology☆36Nov 12, 2022Updated 3 years ago
- ggDoubleHeat: A heatmap-like visualization tool☆15Sep 12, 2025Updated 6 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Implementation of GP-BART algorithm.☆17Dec 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 3 months ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆15Apr 1, 2026Updated last week
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆15Dec 3, 2024Updated last year