LKremer / MSA_trimmerLinks
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
☆17Updated 6 years ago
Alternatives and similar repositories for MSA_trimmer
Users that are interested in MSA_trimmer are comparing it to the libraries listed below
Sorting:
- ☆41Updated last year
- ☆26Updated 4 years ago
- Phyling: phylogenetic inference from annotated genomes☆27Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 10 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆32Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- orthology assignment using phylogenetic and network analyses☆47Updated 7 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- ☆27Updated 5 years ago
- HyPhy standalone analyses☆46Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated 2 months ago
- CDS prediction in transcripts☆23Updated 7 months ago
- ☆16Updated 3 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆40Updated 4 months ago