Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
☆17Mar 18, 2019Updated 6 years ago
Alternatives and similar repositories for MSA_trimmer
Users that are interested in MSA_trimmer are comparing it to the libraries listed below
Sorting:
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Mar 28, 2019Updated 6 years ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Sep 5, 2019Updated 6 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆15May 22, 2025Updated 9 months ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated 2 weeks ago
- ☆10Apr 20, 2018Updated 7 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆11Sep 16, 2021Updated 4 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Jan 4, 2025Updated last year
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 3 years ago
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- ☆15Sep 26, 2025Updated 5 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 3 months ago
- ☆18Nov 7, 2024Updated last year
- Approximate nearest neighbour search for microbial genomes based on hash metric☆61Dec 14, 2025Updated 2 months ago
- ☆17Jul 7, 2025Updated 8 months ago
- Scripts for file processing and analysis in phylogenetics and phylogeography☆13Jan 6, 2021Updated 5 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated last week
- Variant call verification☆16May 12, 2025Updated 9 months ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Python API for the Interactive Tree of Life (iTOL)☆38Nov 23, 2025Updated 3 months ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- ☆16Aug 1, 2022Updated 3 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆24Dec 15, 2025Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- ☆21Dec 30, 2025Updated 2 months ago