dkoslicki / MetaPaletteLinks
Metagenomic profiling and phylogenetic distances via common kmers
☆42Updated 4 years ago
Alternatives and similar repositories for MetaPalette
Users that are interested in MetaPalette are comparing it to the libraries listed below
Sorting:
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- ☆19Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago