dkoslicki / MetaPaletteLinks
Metagenomic profiling and phylogenetic distances via common kmers
☆42Updated 4 years ago
Alternatives and similar repositories for MetaPalette
Users that are interested in MetaPalette are comparing it to the libraries listed below
Sorting:
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Merge transcriptome assemblies☆31Updated 9 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- blast, shmlast☆21Updated 5 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 5 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago