Metagenomic profiling and phylogenetic distances via common kmers
☆42Jul 12, 2021Updated 5 years ago
Alternatives and similar repositories for MetaPalette
Users that are interested in MetaPalette are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 7 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 9 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Sep 7, 2026Updated 2 weeks ago
- Ninja Is Not Just Another OTU Picking Solution☆23Apr 23, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast genome and metagenome distance estimation using MinHash☆452Sep 19, 2025Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 9 months ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated 2 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆60Jul 9, 2024Updated 2 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆79Mar 13, 2026Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆32Apr 14, 2026Updated 5 months ago