blaxterlab / blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
☆46Updated 2 years ago
Alternatives and similar repositories for blobology:
Users that are interested in blobology are comparing it to the libraries listed below
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 5 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- genomic alignment similarity search tool☆19Updated 7 months ago
- ☆52Updated 3 years ago
- GATB Minia assembly pipeline☆30Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Tools and Utilities for msmc and msmc2☆46Updated last year