bcgsc / btl_bloomfilterLinks
The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
☆18Updated 3 years ago
Alternatives and similar repositories for btl_bloomfilter
Users that are interested in btl_bloomfilter are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆87Updated this week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- A tool for merging large BWTs☆26Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 4 months ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago
- A genomic minhashing implementation in Rust☆97Updated last week
- Implementation of a Backpack Quotient Filter☆12Updated 3 weeks ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- dynamic-updateable-index☆11Updated 9 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- External memory suffix array construction using inducing☆11Updated 4 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- BWT-based index for graphs☆71Updated 3 months ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆84Updated 8 months ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Relative data structures based on the BWT☆12Updated 7 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago