Alternatives and similar repositories for btl_bloomfilter

Users that are interested in btl_bloomfilter are comparing it to the libraries listed below

• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆89Updated this week
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆13Updated 8 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆29Updated 3 weeks ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• medvedevgroup / UST
  ☆25Updated 4 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 3 months ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated 7 months ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 7 years ago
• lrobidou / findere
  ☆18Updated 9 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated 2 years ago
• lh3 / ropebwt2
  Incremental construction of FM-index for DNA sequences
  ☆71Updated last year
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆72Updated 5 months ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆61Updated 4 months ago
• BilkentCompGen / mrfast
  micro-read Fast Alignment Search Tool
  ☆19Updated 6 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• langmead-lab / vargas
  ☆25Updated last week
• VGP / vgp-tools
  ☆28Updated 4 months ago
• COMBINE-lab / SkipPatch
  dynamic-updateable-index
  ☆11Updated 9 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• Kingsford-Group / remuval
  ☆12Updated 5 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 7 years ago
• Kingsford-Group / kbf
  ☆15Updated 9 years ago