bcgsc / btl_bloomfilterLinks
The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
☆18Updated 3 years ago
Alternatives and similar repositories for btl_bloomfilter
Users that are interested in btl_bloomfilter are comparing it to the libraries listed below
Sorting:
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated last year
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Efficient construction of the BWT using string compression☆20Updated 7 months ago
- A genomic minhashing implementation in Rust☆101Updated 6 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆90Updated 3 weeks ago
- ☆24Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- ☆24Updated 4 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- Fast approximation of similarity for sets of very different sizes☆20Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated 2 months ago
- GFA parser in Rust☆30Updated 2 years ago
- Benchmark on adaptive banded algorithm☆19Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 7 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 9 months ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- ☆10Updated last year
- Parallel Block GZIP☆50Updated 9 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆63Updated 5 years ago
- BWT-based index for graphs☆73Updated 9 months ago