leoisl / bacterial_assembly_pipelineLinks
☆11Updated last year
Alternatives and similar repositories for bacterial_assembly_pipeline
Users that are interested in bacterial_assembly_pipeline are comparing it to the libraries listed below
Sorting:
- De novo VIral Genome Annotator☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆13Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Neptune: Genomic Signature Discovery☆20Updated last year
- Read contamination removal☆25Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- ☆16Updated 2 years ago
- ☆13Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆25Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Pan-genome Analysis☆12Updated 6 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated this week
- Nanopore Real-Time Analysis Tool☆15Updated last year