leoisl / bacterial_assembly_pipeline
☆11Updated last year
Alternatives and similar repositories for bacterial_assembly_pipeline:
Users that are interested in bacterial_assembly_pipeline are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 11 months ago
- Neptune: Genomic Signature Discovery☆20Updated 5 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Processing support for Greengenes2☆12Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Surveillance of pathogens using population genomics and sequencing☆22Updated last week
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 weeks ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated 3 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago