bcgsc / biobloomLinks
Create Bloom filters for a given reference and then use it to categorize sequences
☆76Updated 9 months ago
Alternatives and similar repositories for biobloom
Users that are interested in biobloom are comparing it to the libraries listed below
Sorting:
- LoFreq Star: Sensitive variant calling from sequencing data☆106Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated this week
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Structural Variant Index☆75Updated 8 months ago
- 10x Genomics Reads Simulator☆45Updated last year
- Toolkit for calling structural variants using short or long reads☆108Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Fast and accurate coordinate conversion between assemblies☆115Updated 5 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- De novo genome assembly and multisample variant calling☆113Updated 6 years ago
- ☆49Updated 9 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago