bcgsc / biobloomLinks
Create Bloom filters for a given reference and then use it to categorize sequences
☆76Updated last year
Alternatives and similar repositories for biobloom
Users that are interested in biobloom are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Structural Variant Index☆75Updated last year
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- ☆49Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago